PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g02130.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 135aa    MW: 15298.7 Da    PI: 4.8002
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g02130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-10446444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT eE  ++ da + +G++   +W  +a+ +g g++ +++k ++
   Vang05g02130.1  4 WTREENRRFEDALAVHGPDdpnRWQHVANAVG-GKSVEEVKMHY 46
                     *****************99*************.********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.537154IPR017884SANT domain
SuperFamilySSF466893.66E-12457IPR009057Homeodomain-like
PfamPF002494.4E-8446IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-5447IPR009057Homeodomain-like
SMARTSM007171.9E-5452IPR001005SANT/Myb domain
CDDcd001671.21E-8446No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
LMGWTREENR RFEDALAVHG PDDPNRWQHV ANAVGGKSVE EVKMHYEILQ EDVIRIEHDQ  60
IPLPRYRGAG INGRQIDNEQ SSHISCFGAF DYNDQNVLRN CNSNPINGDA SNINNYQHVD  120
KANEESDSPM KQPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-204721179RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-132AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500715.18e-53PREDICTED: protein RADIALIS-like 1
RefseqXP_014500717.18e-53PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1732e-24RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0L9V9193e-53A0A0L9V919_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RAX93e-53A0A0S3RAX9_PHAAN; Uncharacterized protein
STRINGGLYMA04G03360.12e-44(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153651012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-27RAD-like 6